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hdWGCNA identifies co-expression networks in high-dimensional transcriptomics data

📅 Published: June 1, 2023 👤 Samuel Morabito, Fairlie Reese, Negin Rahimzadeh et al. 📖 Cell Reports Methods 📊 685 citations
AI-Generated Summary

Biological systems are immensely complex, organized into a multi-scale hierarchy of functional units based on tightly regulated interactions between distinct molecules, cells, organs, and organisms. We showcase hdWGCNA using data from autism spectrum disorder and Alzheimer's disease brain samples, identifying disease-relevant co-expression network modules.

⚡ This is an original paraphrased summary — not copied from the abstract. Full paper available at the source link below.

Key Findings
  • 1 While experimental methods enable transcriptome-wide measurements across millions of cells, popular bioinformatic tools do not support systems-level analysis.
  • 2 Here we present hdWGCNA, a comprehensive framework for analyzing co-expression networks in high-dimensional transcriptomics data such as single-cell and spatial RNA sequencing (RNA-seq).
  • 3 hdWGCNA provides functions for network inference, gene module identification, gene enrichment analysis, statistical tests, and data visualization.
Why It Matters

This research advances how AI systems learn, reason, and solve problems — with direct implications for automation and scientific discovery.

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Article Details
Source OpenAlex
Category 🤖 Artificial Intelligence
Published Jun 1, 2023
Journal Cell Reports Methods
DOI 10.1016/j.crmeth.2023.100498
Citations 685
Authors Samuel Morabito, Fairlie Reese, Negin Rahimzadeh, Emily Miyoshi, Vivek Swarup